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Scientist in the Lab

PUSHPANATHAN MUTHUIRULAN, PH.D

What I Do Now

I am currently working as a Research Associate at the Harvard University, Cambridge, MA. The overarching goal of my research is to use functional genomic approaches on understanding how the epigenetic reprogramming contributes to complex skeletal diseases, and if it can identify any therapeutic vulnerabilities to this deregulated epigenetic factors in some cases or actually in most instances in recent findings acts as pathogenic drivers in skeletal diseases. In my current research, I try to integrate epigenomics, genomics, transcriptomics and targeted genetics using CRISPR to identify the targets which could be translated to the clinic, and I also have huge interest in translating my research findings to the clinic, which helps saving billions of people lives who suffer from skeletal diseases.

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BIO

Who I Am

I am currently working as a Research Associate at the Harvard University, Cambridge, MA. The overarching goal of my research is to use functional genomic approaches on understanding how the epigenetic reprogramming contributes to complex skeletal diseases, and if it can identify any therapeutic vulnerabilities to this deregulated epigenetic factors in some cases or actually in most instances in recent findings acts as pathogenic drivers in skeletal diseases. In my current research, I try to integrate epigenomics, genomics, transcriptomics and targeted genetics using CRISPR to identify the targets which could be translated to the clinic, and I also have huge interest in translating my research findings to the clinic, which helps saving billions of people lives who suffer from skeletal diseases.

For my Postdoctoral work at NICHD, National Institutes of Health (NIH), I developed a novel receptor-based GRASP method using CRISPR-cas9 and high resolution microscopy to map neurotransmitter receptors to brain neural circuits that involves visual motion processing in Drosophila.

For my Ph.D. at Department of Genetics, Madurai Kamaraj University, I had discovered a novel antifungal Peptide, MMGP1 from marine metagenome and characterized its distinct anti fungal mechanism with an ultimate goal to combat opportunistic human fungal infections such as, candidiasis and aspergillosis.

With my research experience, I gained adequate knowledge and expertise in Omics technologies, genetic engineering, antimicrobial drug discovery, protein engineering and mapping neural circuits, developmental and evolutionary genetics.

And also, exposure to a diverse mixture of academic and industrial research experiences had shaped my ability to be highly productive working either as an individual or part of research teams. Exposure to diverse research groups during my graduation and postdoctoral research have allowed me to interact effectively with scientists across various disciplines. This collaborative experience has allowed me to communicate ideas effectively across different biological disciplines. These skill sets, in combination with my high levels of focus and attention to detail, scientific project management skills allowed me to complete technically challenging scientific task with publishable quality of results.

Technical expertise: NGS, CRISPR, flow cytometry, Mass spectrometry, Confocal & Super resolution Microscopy, CD spectroscopy, FPLC/HPLC, 2Dgel, Cell culture, rDNA technology, IHC, transgenesis.

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RESEARCH PROJECTS

From Theory to Reality

Unlocking the complexity and immense interconnectedness of the scientific mechanisms which dictate the properties and processes of the natural world is a major goal of my research. To this end, I seek to acquire a detailed understanding of many systems and how these various systems function together to generate the observations and measurements from my experimentation. Have a look at some of my projects below.

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Genetics of Height and Skeletal Development in Humans

2017- Present

Height is a complex trait influenced by genes and variety of environmental factors that has gained insights into the genetic architecture of common human traits and diseases. In recent years, a number of rare genetic variants have been identified in humans that are convincingly and reproducibly associated with normal height variations and growth disorders. My primary research interest is to use functional genomic approaches to understand how these genetic variants or DNA changes in human genome might affects normal gene expression pattern leading to alteration in bone growth and development. I am also interested in uncovering novel height variants or loci that close the “missing heritability” gap, whilst strengthening our knowledge on the biology of traits, evolutionary significance on human height variations and heritability of height disorders.

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Mapping Neurotransmitter Receptors to Active Synapses using Novel Receptor-Based GRASP Method

2014-2017

As a postdoctoral researcher at NICHD, National Institutes of Health, I have developed a novel receptor based GRASP (R-GRASP) strategies to map neurotransmitter receptors to synaptic circuit that involves visual motion information processing in Drosophila. This method allows retrospective labelling of active synapses based on usage of neurotransmitter receptors.

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Antimicrobial Drug Discovery

2010-2014

As a graduate student, I have discovered a novel antifungal peptide, MMGP1 from marine metagenome using function based metagenomic approaches. Further, I have characterized its distinct antifungal mechanisms in Candida albicans. A major advantage of this discovery is the novelty of MMGP1 and its anti fungal mechanism against Candida albicans, which will enable us to use this peptide in treatment of Candidiasis.

 

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MICROBIAL COMMUNITY ANALYSIS USING NEXT GENERATION SEQUENCING

2010-2014

Building upon my collobrative research work done with my former lab colleague, I have used NGS data analysis pipelines and explored the microbial community prevailing in different environmental samples including termite gut, termite nest butter milk and marine sediments. These studies have provided valuable insights into the succession of microbial community.

 

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MICROBIAL PATHOGENESIS

2010-2014

I worked in collaboration with my colleagues to elucidate the pathogenesis mechanism of Streptococcus agalactiae (a pathogen isolated from circulating microbiome of cardiovascular disease patients) using rat cardiomycocytes.  This study has provided valuable insight into molecular pathways utilized by S. agalactiae to infect human.

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Bioprocess Development

2008-2009

I worked in Strides Arcolab R&D research project towards development of an indigenous strategies for cost effective and large scale fermentative production of pneumocandin B0 from marine fungus, Glarea Lozoyensis. This project gives me an amazing opportunity to learn about bioprocess technology and large scale production of antimicrobial drugs using bioreactors.

Contact me to learn more about my research.

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CONTACT ME

Thanks for your interest in my research. Get in touch with any questions or comments regarding my work and publications. I’d love to hear from you.

Peabody Museum, 5th Floor
11 Divinity Avenue
Cambridge, MA 02138

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